2026

Robust Federated Intrusion Detection via Prototype Distillation

Robust Federated Intrusion Detection via Prototype Distillation

Shaifeng Zheng , Wang Liu , Junkai Ji , Ka-Chun Wong , Jianyong Chen , Qiuzhen Lin
Knowledge-Based Systems 2026
A Molecular Language Model Driven Genetic Algorithm for Multi-Objective Molecular Generation

A Molecular Language Model Driven Genetic Algorithm for Multi-Objective Molecular Generation

Tiangai Yao , Zhangfan Yang , Junkai Ji , Ka-Chun Wong , Zexuan Zhu , Jianqiang Li , Carlos A. Coello Coello
IEEE Transactions on Evolutionary Computation 2026
UINO-FSS: Unifying Representation Learning and Few-Shot Segmentation via Hierarchical Distillation and Mamba-HyperCorrelation

UINO-FSS: Unifying Representation Learning and Few-Shot Segmentation via Hierarchical Distillation and Mamba-HyperCorrelation

Wei Zhuo , Zhiyue Tang , Wufeng Xue , Hao Ding , Junkai Ji , Linlin Shen
IEEE Transactions on Image Processing 2026
DegradeQuery: Counterfactual Tuple Pretraining for Context-Aware PROTAC Degradation Prediction

DegradeQuery: Counterfactual Tuple Pretraining for Context-Aware PROTAC Degradation Prediction

Dong Xu , Zhangfan Yang , Jiantao Wu , Zexuan Zhu , Jianqiang Li , Junkai Ji
arXiv 2026
READ: A Retrieval-Alignment Diffusion Framework for Structure-Based Drug Design

READ: A Retrieval-Alignment Diffusion Framework for Structure-Based Drug Design

Dong Xu , Zhangfan Yang , Junchuang Cai , Sisi Yuan , Zexuan Zhu , Jianqiang Li , Junkai Ji
IEEE Transactions on Computational Biology and Bioinformatics 2026
Synchronized Membrane Potential-driven Plasticity for Spiking Neural Networks

Synchronized Membrane Potential-driven Plasticity for Spiking Neural Networks

Junkai Ji , Haochang Jin , Lijia Ma , Qiuzhen Lin , Ka-Chun Wong , Zexuan Zhu , Jianqiang Li
IEEE Transactions on Cognitive and Developmental Systems 2026
Structure-Function Aware Evolutionary Multitasking for Therapeutic Peptide Co-Discovery

Structure-Function Aware Evolutionary Multitasking for Therapeutic Peptide Co-Discovery

Qiyuan Yu , Zhangfan Yang , Wei Zhou , Junkai Ji , Shan He , Zexuan Zhu , Yew-Soon Ong
IEEE Transactions on Evolutionary Computation 2026
Evaluating a Novel Incremental-Input Neural Network for Multivariate Air Temperature Forecasting

Evaluating a Novel Incremental-Input Neural Network for Multivariate Air Temperature Forecasting

Zhenyu Song , Shuangyu Song , Shuangbao Song , Lixing Tan , Cheng Tang , Junkai Ji
Engineering Applications of Artificial Intelligence 2026
SLSREC: Self-Supervised Contrastive Learning for Adaptive Fusion of Long- and Short-Term User Interests

SLSREC: Self-Supervised Contrastive Learning for Adaptive Fusion of Long- and Short-Term User Interests

Wei Zhou , Yue Shen , Junkai Ji , Yinglan Feng , Xing Tang , Xiuqiang He , Liang Feng , Zexuan Zhu
arXiv 2026
Zero-Shot Recommendation: Towards Class Semantic Relation Learning for Inferring Labels of Unseen Micro-Videos

Zero-Shot Recommendation: Towards Class Semantic Relation Learning for Inferring Labels of Unseen Micro-Videos

Junyang Chen , Huan Wang , Yirui Wu , Qiuzhen Lin , Yunfeng Diao , Junkai Ji
Proceedings of the AAAI Conference on Artificial Intelligence 2026
An Explainable Machine Learning-Based Scoring Function Using Interpretable Features and Model Explanation Approaches for Binding Affinity Prediction

An Explainable Machine Learning-Based Scoring Function Using Interpretable Features and Model Explanation Approaches for Binding Affinity Prediction

Xingqian Chen , Shuangbao Song , Junkai Ji , Shuangyu Song , Xin Zhou , Hao Zhang
Expert Systems with Applications 2026
METRON: Metabolic Dynamic Perception Kolmogorov-Arnold Network for Biological Age Estimation

METRON: Metabolic Dynamic Perception Kolmogorov-Arnold Network for Biological Age Estimation

Zhongshen Li , Jixiang Yu , Shen You , Hao Liu , Luyang Cai , Yuxuan Deng , Leyi Wei , Junkai Ji , Qiuzhen Lin , Xiangtao Li , Ka-Chun Wong
IEEE Transactions on Computational Biology and Bioinformatics 2026
Feshdock: A Divide-and-Conquer Protein–Protein Complex Conformation Prediction Algorithm

Feshdock: A Divide-and-Conquer Protein–Protein Complex Conformation Prediction Algorithm

Jin Zhou , Juan Zhang , Junkai Ji , Qiuzhen Lin , Zexuan Zhu , Jianqiang Li , Carlos A. Coello Coello
IEEE Transactions on Evolutionary Computation 2026
BioLM-Score: Language-Prior Conditioned Probabilistic Geometric Potentials for Protein-Ligand Scoring

BioLM-Score: Language-Prior Conditioned Probabilistic Geometric Potentials for Protein-Ligand Scoring

Zhangfan Yang , Baoyun Chen , Dong Xu , Jia Wang , Ruibin Bai , Junkai Ji , Zexuan Zhu
arXiv 2026
RIGA-Fold: A General Framework for Protein Inverse Folding via Recurrent Interaction and Geometric Awareness

RIGA-Fold: A General Framework for Protein Inverse Folding via Recurrent Interaction and Geometric Awareness

Sisi Yuan , Jiehuang Chen , Junchuang Cai , Dong Xu , Xueliang Li , Zexuan Zhu , Junkai Ji
arXiv 2026
Unveiling Scaling Behaviors in Molecular Language Models: Effects of Model Size, Data, and Representation

Unveiling Scaling Behaviors in Molecular Language Models: Effects of Model Size, Data, and Representation

Dong Xu , Qihua Pan , Sisi Yuan , Jianqiang Li , Zexuan Zhu , Junkai Ji
arXiv 2026
From Tokens to Blocks: A Block-Diffusion Perspective on Molecular Generation

From Tokens to Blocks: A Block-Diffusion Perspective on Molecular Generation

Qianwei Yang , Dong Xu , Zhangfan Yang , Sisi Yuan , Zexuan Zhu , Jianqiang Li , Junkai Ji
arXiv 2026
UniBreak: A Unified Evolutionary Token-Level Jailbreaking Framework for Large Language Models

UniBreak: A Unified Evolutionary Token-Level Jailbreaking Framework for Large Language Models

Shen You , Wei Jiang , Hefei Mei , Danei Gong , Zhongshen Li , Jixiang Yu , Junkai Ji , Qiuzhen Lin , Xiangtao Li , Ka-Chun Wong
IEEE Transactions on Evolutionary Computation 2026
Rethinking Drug-Drug Interaction Modeling as Generalizable Relation Learning

Rethinking Drug-Drug Interaction Modeling as Generalizable Relation Learning

Dong Xu , Jiantao Wu , Qihua Pan , Sisi Yuan , Zexuan Zhu , Junkai Ji
arXiv 2026

2025

Toward Closed-loop Molecular Discovery via Language Model, Property Alignment and Strategic Search

Toward Closed-loop Molecular Discovery via Language Model, Property Alignment and Strategic Search

Junkai Ji, Zhangfan Yang, Dong Xu, Ruibin Bai, Jianqiang Li, Tingjun Hou, Zexuan Zhu
arXiv 2025
A temporally coded multilayer spiking neural network and its memristor-based hardware implementationn

A temporally coded multilayer spiking neural network and its memristor-based hardware implementationn

H Jin , X Yang , S Song , Z Song , J Ji
Neurocomputing 2025
Strokeformer: A novel deep learning paradigm training transformer-based architecture for stroke prognosis prediction

Strokeformer: A novel deep learning paradigm training transformer-based architecture for stroke prognosis prediction

M Cao , H Jinn , Y Wang , L Wang , Jianqiang Li , J Ji
PLOS One 2025
IBEX: Information-Bottleneck-EXplored Coarse-to-Fine Molecular Generation under Limited Data

IBEX: Information-Bottleneck-EXplored Coarse-to-Fine Molecular Generation under Limited Data

Dong Xu , Zhangfan Yang , Jenna Xinyi Yao , Shuangbao Song , Zexuan Zhu , Junkai Ji
arXiv 2025
FROGENT: An End-to-End Full-process Drug Design Agent

FROGENT: An End-to-End Full-process Drug Design Agent

Qihua Pan , Dong Xun , Jenna Xinyi Yao , L Wang , Lijia Mai , Zexuan Zhu , Junkai Ji
arXiv 2025
A Dual-Directional Context-Aware Test-Time Learning for Text Classification

A Dual-Directional Context-Aware Test-Time Learning for Text Classification

Dong Xu , Mengyao Liao , Zhenglin Lai , Xueliang Li , Junkai Ji
International Conference on Intelligent Computing 2025
Federated Intrusion Detection System With Cost-Sensitive Learning for Internet of Thingsn

Federated Intrusion Detection System With Cost-Sensitive Learning for Internet of Thingsn

Qiuzhen Lin , Wang Liu , Shaifeng Zheng , Junkai Ji , Ka-Chun Wong Jianqiang Li , Carlos A Coello Coello
IEEE Internet of Things Journal 2025
Phage Host Prediction Using Deep Neural Network with Multi-source Protein Language Models and Squeeze-and-Excitation Attention Mechanism

Phage Host Prediction Using Deep Neural Network with Multi-source Protein Language Models and Squeeze-and-Excitation Attention Mechanism

Peng Gao , Long Xu , Yuan Bai , Qiuzhen Lin , Junkai Ji , Lijia Ma
IEEE Journal of Biomedical and Health Informatics 2025
Reimagining Target-Aware Molecular Generation through Retrieval-Enhanced Aligned Diffusion

Reimagining Target-Aware Molecular Generation through Retrieval-Enhanced Aligned Diffusion

Dong Xu , Zhangfan Yang , Ka-chun Wong , Zexuan Zhu , Jiangqiang Li , Junkai Ji
IEEE/ACM Transactions on Computational Biology and Bioinformatics 2025
A Node-Degree Power-Law Distribution-Based Honey Badger Algorithm for Global and Engineering Optimization

A Node-Degree Power-Law Distribution-Based Honey Badger Algorithm for Global and Engineering Optimization

Shuangyu Song , Zhenyu Song , Xingqian Chen , Junkai Ji
Electronics 2025
A Logic Circuit-Based Intrusion Detection System Using a Dendritic Neural Model Ensemble

A Logic Circuit-Based Intrusion Detection System Using a Dendritic Neural Model Ensemble

Junkai Ji , Haochang Jin , Jiajun Zhao , Qiuzhen Lin , Jianqiang Li , Zexuan Zhu
IEEE Computational Intelligence Magazine 2025